org.sing_group.gc4s.genomebrowser

Class GenomeBrowserState

java.lang.Object

org.sing_group.gc4s.genomebrowser.GenomeBrowserState

public class GenomeBrowserState
extends Object

This class encapsulates the state of a GenomeBrowser.

Author:

hlfernandez

Constructor Summary

Constructors

Constructor and Description
GenomeBrowserState() Creates a new GenomeBrowserState instance with empty values.

Method Summary

Modifier and Type	Method and Description
String	getChr()
LinkedList<File>	getFiles()
long	getFinalPosition()
long	getInitialPosition()
int	getNumberOfIntervals()
LinkedList<Painter>	getPainters()
Collection<TrackOption>	getTrackOptions(Painter p)
void	saveStatus(GenomeBrowser genomeBrowser) Updates the variables in this object to store the current status of the specified GenomeBrowser.
void	setChr(String chr)
void	setFinalPosition(long finalPosition)
void	setInitialPosition(long initialPosition)
void	setNumberOfIntervals(int numberOfIntervals)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenomeBrowserState

public GenomeBrowserState()

Creates a new GenomeBrowserState instance with empty values.

Method Detail

getInitialPosition

public long getInitialPosition()

setInitialPosition

public void setInitialPosition(long initialPosition)

getFinalPosition

public long getFinalPosition()

setFinalPosition

public void setFinalPosition(long finalPosition)

getChr

public String getChr()

setChr

public void setChr(String chr)

getNumberOfIntervals

public int getNumberOfIntervals()

setNumberOfIntervals

public void setNumberOfIntervals(int numberOfIntervals)

getFiles

public LinkedList<File> getFiles()

getPainters

public LinkedList<Painter> getPainters()

getTrackOptions

public Collection<TrackOption> getTrackOptions(Painter p)

saveStatus

public void saveStatus(GenomeBrowser genomeBrowser)

Updates the variables in this object to store the current status of the specified GenomeBrowser.

Parameters:

genomeBrowser - a GenomeBrowser object