v2.0.0

Downloading and Installing BioAnnote

Warning: BioAnnote must be installed in a path that does not contain spaces. For example:

  • C:\Program Files\BioAnnote [Error]
  • C:\Programs\BioAnnote [Ok]
  • /home/user/my programs/BioAnnote [Error]
  • /home/user/programs/BioAnnote [Ok]

A) Download and Install BioAnnote

We provide two versions of BioAnnote. Full version includes an internal web server, which allows the offline annotation. Light version uses an external web service for annotation, therefore documents can only be annotated online.

Windows Windows Users
Full Version (138 MB)
Light Version (54 MB)
Download and double click in setup.exe
Linux Linux Users
Full Version (143 MB)
Light Version (60 MB)
Download and double click the bsx (Bash Self-eXtracting) file
Mac Mac/Other Users
Full Version (123 MB)
Light Version (40 MB)
Download and double click the jar file
Requisite: You will need Java (6 or later)

B) Install using Java Web Start

Launch the BioAnnote installer directly from the Web.

Full version Install BioAnnote

Light version Install BioAnnote

Requisite: You will need Java (6 or later)


Sample Data

Following sample data can be used to test BioAnnote.

Sample Data sample_cases.zip (0.2 MB) - Example taken from http://path.upmc.edu/cases/

Version History

A) Download and Install BioAnnote Meta-Server

This is the BioAnnote meta-server. By default, the BioAnnote client connects to our meta-server. However, you can download, adapt it to your needs and connect your client to it. The meta-server is distributed as a standard Java Web Archive (war), deployable in Apache Tomcat, for example.

Windows All Users
Server (42 MB)
Download and deploy it in a Java Web Server

Version History

Source code of BioAnnote is published in SourceForge and publicly available for download at https://sourceforge.net/projects/bioannote/