SING Research Group

K. Troulé; H. López-Fernández; S. García-Martín; M. Reboiro-Jato; C. Carretero-Puche; J. Martorell-Marugán; G. Martín-Serrano; P. Carmona-Sáez; D. González-Peña; F. Al-Shahrour; G. Gómez-López (2020) DREIMT: a drug repositioning database and prioritization tool for immunomodulation. Bioinformatics. Accepted for publication. ISSN: (Online) 1460-2059 - (Print) 1367-4803
M. Novo-Lourés; R. Pavón; Rosalía Laza; D. Ruano-Ordas; J. R. Méndez (2020) Using Natural Language Preprocessing Architecture (NLPA) for Big Data Text Sources. Scientific Programming. Volume 2020, Article ID 2390941, 13 pages. ISSN: 1058-9244
N. Estévez-Rionegro (2020) Corpus de Estilo Directo Atípico en Español (CEDAE). LinRed: Lingüística en la red, núm 17. ISSN: 1697-0780
O. Estévez; L. Anibarro; E. Garet; Á. Pallares; L. Barcia; L. Calviño; C. Maueia; T. Mussá; F. Fdez-Riverola; D. Glez-Peña; M. Reboiro-Jato; H. López-Fernández; N. Fonseca; R. Reljic; Á. González-Fernández (2020) An RNA-seq based machine learning approach identifies latent tuberculosis patients with an active tuberculosis profile. Frontiers in Immunology. Volume 11, article ID 1470. ISSN: 1664-3224
G. Blanco; L. Ruiz; H. Tamés; P. Ruas-Madiedo; F. Fdez-Riverola; B. Sánchez; A. Lourenço; A. Margolles (2020) Revisiting the metabolic capabilities of Bifidobacterium longum susbp. longum and Bifidobacterium longum subsp. infantis from a glycoside hydrolase perspective. Microorganisms. Volume 8/5, article ID 723. ISSN: 2076-2607
G. Pérez-Rodríguez; M. Pérez-Pérez; F. Fdez-Riverola; A. Lourenço (2020) Mining the Sociome for Health Informatics: analysis of therapeutic lifestyle adherence of diabetic patients in Twitter. Future Generation Computer Systems. Volume 110, pp. 214-232. ISSN: 0167-739X
N. Cambeiro-Pérez; C. Hidalgo-Cantabrana; M.A. Moro-García; A. Blanco-Míguez; F. Fdez-Riverola; S. Riestra; A. Lourenço; R. Alonso-Arias; A. Margolles; E. Martínez-Carballo; B. Sánchez (2020) In silico and functional analyses of immunomodulatory peptides encrypted in the human gut metaproteome. Journal of Functional Foods. Volume 70, article ID 103969. ISSN: 1756-4646
B. T. Magalhães; A. Lourenço; N. F. Azevedo (2020) Computational resources and strategies to assess single-molecule dynamics of the translation process in S. cerevisiae. Briefings in Bioinformatics. Accepted for publication. ISSN: (Online) 1477-4054 - (Print) 1467-5463
A. Ramoa; J. Condeço; F. Fdez-Riverola; A. Lourenço (2020) HaemoKBS: a knowledge-based system for real-time, continuous categorisation of adverse reactions in blood recipients. Neurocomputing. Accepted for Publication. ISSN: 0925-2312
N. Ocampo-Quintero; P. Vidal-Cortés; L. del Río Carbajo; F. Fdez-Riverola; M. Reboiro-Jato; D. Glez-Peña (2020) Enhancing sepsis management though machine learning techniques: a review. Medicina Intensiva. Accepted for Publication. ISSN: 0210-5691
O. Graña-Castro; H. López-Fernández; A. Nogueira-Rodríguez; F. Fdez-Riverola; F. Al-Shahrour; D. Glez-Peña (2020) Metatax: Metataxonomics with a Compi-based pipeline for Precision Medicine. Interdisciplinary Sciences: Computational Life Sciences. Accepted for Publication. ISSN: (Online) 1867-1462 - (Print) 1913-2751
I. Velez de Mendizabal; V. Basto-Fernandes; E. Ezpeleta; J.R. Méndez; U. Zurutuza (2020) SDRS: A new lossless dimensionality reduction for text corpora. Information Processing & Management. Volume 57(4), 102249. ISSN: 0306-4573
L. Borrajo; A. Seara Vieira; E.L. Iglesias (2020) An HMM-based synthetic view generator to improve the efficiency of ensemble systems. Logic Journal of the IGPL. Volume 1 (1), pp. 4-18. ISSN: (Online) 1368-9894 - (Print) 1367-0751
F. Fdez-Riverola; M.P. Rocha; M.S. Mohamad; N. Zaki; J.A. Castellanos-Garzón, guest editors (2020) Special issue: Practical Applications of Computational Biology & Bioinformatics in 2019. Interdisciplinary Sciences: Computational Life Sciences. Volume 12/1. ISSN: 1913-2751 (Print) 1867-1462 (Online)
G. Blanco; B. Sánchez; L. Ruiz; F. Fdez-Riverola; A. Margolles; A. Lourenço (2020) Computational approach to the systematic prediction the glycolytic abilities: looking into human microbiota. IEEE-ACM Transactions on Computational Biology and Bioinformatics. Accepted for Publication. ISSN: 1545-5963
A. Nogueira-Rodríguez; R. Domínguez-Carbajales; H. López-Fernández; Á. Iglesias; J. Cubiella; F. Fdez-Riverola; M. Reboiro-Jato; D. Glez-Peña (2020) Deep Neural Networks approaches for detecting and classifying colorectal polyps. Neurocomputing. Accepted for publication. ISSN: 0925-2312
C. Hidalgo-Cantabrana; M.A. Moro-García; A. Blanco-Míguez; F. Fdez-Riverola; M. Oliván; L.J. Royo; S. Riestra; A. Margolles; A. Lourenço; R. Alonso-Arias; B. Sánchez (2020) The extracellular proteins of Lactobacillus acidophilus DSM 20079T display anti-inflammatory effect in both in piglets, healthy human donors and Crohn’s Disease patients. Journal of Functional Foods. Volume 64, article ID 103660. ISSN: 1756-4646
G. Blanco; R. Pérez-López; F. Fdez-Riverola; A. Lourenço (2020) Understanding the social evolution of the Java community in Stack Overflow: a 10-year study of developer interactions. Future Generation Computer Systems. Volume 105, pp. 446-454. ISSN: 0167-739X
S. Jorge; K. Pereira; H. López-Fernández; W. LaFramboise; R. Dhir; J. Fernández-Lodeiro; C. Lodeiro; H. M. Santos; J. L. Capelo-Martínez (2020) Ultrasonic-assisted extraction and digestion of proteins from solid biopsies followed by peptide sequential extraction hyphenated to MALDI-based profiling holds the promise of distinguishing renal oncocytoma from chromophobe renal cell carcinoma. Talanta. Volume 206, Article 120180. ISSN: 0039-9140

F. Fdez-Riverola, M.S. Mohamad, M.P. Rocha, J.F. de Paz, P. González, guest editors (2019) Special issue: Practical Applications of Computational Biology & Bioinformatics in 2018. Interdisciplinary Sciences: Computational Life Sciences. Volume 11/1. ISSN: 1913-2751
D. Ruano-Ordás; L. Burggraaff; R. Liu; C. van der Horst; L. H. Heitman; M. T.M. Emmerich; J. R. Mendez; I. Yevseyevae; G. Van Westen (2019) A Multiple Classifier System Identifies Novel Cannabinoid CB2 Receptor Ligands. Journal of Cheminformatics. Volume 11, Article 66. ISSN: 1758-2946
S. Rocha; J. Vieira; N. Vázquez; H. López-Fernández; F. Fdez-Riverola; M. Reboiro-Jato; A. D. Sousa; C. P. Vieira (2019) ATXN1 N-terminal region explains the binding differences of wild-type and expanded forms. BMC Medical Genomics. Volume 12: 145. ISSN: 1755-8794
B. Villamarín-Bello; B. Uriel-Latorre; F. Fdez-Riverola; M. Sande-Meijide; D. Glez-Peña (2019) Gold standard evaluation of an automatic HAIs surveillance System. Biomed Research International. Volume 2019/Article ID 1049575, 10 pages. ISSN: 2314-6133
A. Blanco-Míguez; F. Fdez-Riverola; B. Sánchez; A. Lourenço (2019) Resources and tools for the high-throughput, multi-omic study of intestinal microbiota. Briefings in Bioinformatics. Volume 20/3, pp. 1032-1056. ISSN: (Online) 1477-4054 - (Print) 1467-5463
B. Cruz González; G. Gómez Meire; D. Ruano-Ordás; J. R. Méndez; I. Yevseyeva; H. Janicke (2019) A Practical Approach to Protect IoT Devices against Attacks and Compile Security Incident Datasets. Scientific Programming. Special Issue on Scientific Programming in the Fog and Edge Computing Era. Volume 2019, Article ID 9067512, 11 pages. ISSN: 1058-9244
J. Vieira; S. Rocha; N. Vázquez; H. López-Fernández; F. Fdez-Riverola; M. Reboiro-Jato; C.P. Vieira (2019) Predicting specificities under the non-self gametophytic self-incompatibility recognition model. Volume 10, Article 879. Frontiers in Plant Science. ISSN: 1664-462X
M. Pérez-Pérez; G. Pérez-Rodríguez; A. Blanco-Míguez; F. Fdez-Riverola; A. Valencia; M. Krallinger; A. Lourenço (2019) Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm. Journal of Cheminformatics. Volume 11/42, pp. 1-16. ISSN: 1758-2946
S. Henriques; P. Duque; H. López-Fernández; N. Vázquez; F. Fdez-Riverola; M. Reboiro-Jato; C.P. Vieira; J. Vieira (2019) Multiple independent L-gulonolactone oxidase (GULO) gene losses and Vitamin C synthesis reacquisition events in non-Deuterostomian animal species. BMC Evolutionary Biology. Volume 19: 126. ISSN: 1471-2148
M. Pérez-Pérez; G. Pérez-Rodríguez; F. Fdez-Riverola; A. Lourenço (2019) Using Twitter to understand the human bowel disease community: an exploratory analysis of key topics. Journal of Medical Internet Research. Volume 21/8, article ID e12610. ISSN: 1438-8871
F. Fdez-Riverola; M. Rocha, guest editors (2019) Selected Extended Papers of the 12th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB). Journal of Integrative Bioinformatics. Volume 16/1, pp. 1-2. ISSN: 1613-4516
G. Blanco; B. Sánchez; F. Fdez-Riverola; A. Margolles; A. Lourenço (2019) In silico approach for unveiling the glycoside hydrolase activities in Faecalibacterium prausnitzii through a systematic and integrative large-scale analysis. Frontiers in Microbiology. Volume 10, article ID 517. ISSN: 664-302X
H. López-Fernández; A. Blanco-Míguez; F. Fdez-Riverola; B. Sánchez; A. Lourenço (2019) DEWE: a novel tool for executing differential expression RNA-Seq workflows in biomedical research. Computers in Biology and Medicine. Volume 107, pp. 197-205. ISSN: 0010-4825
P. Maia; G. Pérez-Rodríguez; M. Pérez-Pérez; F. Fdez-Riverola; A. Lourenço; N.F. Azevedo (2019) Application of Agent-Based Modelling to assess single-molecule transport across the cell envelope of E. coli. Computers in Biology and Medicine. Volume 107, pp. 218-226. ISSN: 0010-4825
A. Blanco-Míguez; F. Fdez-Riverola; A. Lourenço; B. Sánchez (2019) In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota. Food Research International. Volume 119, pp. 221-226. ISSN: 0963-9969
N. Vázquez; H. López-Fernández; C.P. Vieira; F. Fdez-Riverola; J. Vieira; M. Reboiro-Jato (2019) BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High Quality Sequence Data and Application to the Identification of the Putative Coffea S-locus. Interdisciplinary Sciences: Computational Life Sciences. Volume 11(1), pp. 57-67. ISSN: 1913-2751
A. Blanco-Míguez; G. Blanco; A. Gutierrez-Jácome; F. Fdez-Riverola; B. Sánchez; A. Lourenço (2019) Computational prediction of the bioactivity potential of proteomes based on expert knowledge. Journal of Biomedical Informatics. Vol. 91: article ID 103121. ISSN: 1532-0464
N. Vázquez; S. Rocha; H. López-Fernández; A. Torres; R. Camacho; F. Fdez-Riverola; J. Vieira; C.P. Vieira; M. Reboiro-Jato (2019) EvoPPI 1.0: a Web Platform for Within and Between Species Multiple Interactome Comparisons and Application to Nine polyQ Proteins Determining Neurodegenerative Diseases. Interdisciplinary Sciences: Computational Life Sciences. Volume 11(1), pp. 45-56. ISSN: 1913-2751
G. Pérez-Rodríguez; M. Pérez-Pérez; F. Fdez-Riverola; A. Lourenço (2019) Online visibility of software-related web sites: the case of biomedical text mining tools. Information Processing & Management. Volume 56/3, pp. 565-583. ISSN: 0306-4573
H. López-Fernández; P. Duque; S. Henriques; N. Vázquez; F. Fdez-Riverola; C.P. Vieira; M. Reboiro-Jato; J. Vieira (2019) Bioinformatics Protocols for Quickly Obtaining Large-Scale Data Sets for Phylogenetic Inferences. Interdisciplinary Sciences: Computational Life Sciences. Volume 11(1), pp. 1-9. ISSN: 1913-2751
D. Ruano-Ordás; I. Yevseyeva; V. Basto Fernandes; J.R. Méndez; M.T.M. Emmerich (2019) Improving the drug discovery process by using multiple classifier systems. Expert Systems With Applications. Volume 121, pp. 292-303. ISSN: 0957-4174
J.R. Méndez; T. R. Cotos-Yáñez; D. Ruano-Ordás (2019) A New Semantic-Based Feature Selection Method for Spam Filtering. Applied Soft Computing. Volume 76, pp. 89-104. ISSN: 1568-4946

M. Rocha; F. Fdez-Riverola (2018) EDITORIAL: Selected Papers from the Annual PACBB Conference 2015: Special Issue. Current Bioinformatics. Volume 13/6, pp. 565. ISSN: (Online) 2212-392X - (Print) 1574-8936
J. Fdez-Glez; D. Ruano-Ordás; J.R. Méndez; F. Fdez-Riverola; R. Laza; R. Pavón (2018) Determining the influence of class imbalance for the triage of biomedical documents. Current Bioinformatics. Volume 13/6, pp. 592-605. ISSN: (Online) 2212-392X - (Print) 1574-8936
O. Graña; M. Rubio-Camarillo; F. Fdez-Riverola; D.G. Pisano; D. Glez-Peña (2018) nextpresso: next generation sequencing expression analysis pipeline. Current Bioinformatics. Volume 13/6, pp. 583-591. ISSN: (Online) 2212-392X - (Print) 1574-8936
A. Blanco-Míguez; F. Fdez-Riverola; B. Sánchez; A. Lourenço (2018) BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results. PLOS ONE. Volume 13/10, e0205286. ISSN: 1932-6203
H. López-Fernández; M. Reboiro-Jato; D. Glez-Peña; R. Laza; R. Pavón; F. Fdez-Riverola (2018) GC4S: a bioinformatics-oriented Java software library of reusable graphical user interface components. PLOS ONE. Volume 13(9): e0204474. ISSN: 1932-6203
E. Piñeiro-Yáñez; M. Reboiro-Jato; G. Gómez-López; J. Perales-Patón; K. Troulé; J.M. Rodríguez; H. Tejero; T. Shimamura; P.P. López-Casas; J. Carretero; A. Valencia; M. Hidalgo; D. Glez-Peña; F. Al-Shahrour (2018) PanDrugs: a novel method to prioritize anticancer drug treatments according to individual genomic data. Genome Medicine. Volume 10:41. ISSN: 1756-994X
T.R. Rodrigues Grainha; P.A. da Silva Jorge; M. Pérez-Pérez; G. Pérez-Rodríguez; M.O. Pereira; A. Lourenço (2018) Exploring Anti-Quorum Sensing and Anti-Virulence Based Strategies to fight Candida albicans infections: an in silico approach. FEMS Yeast Research. Volume 18, Issue 3, article ID foy022. ISSN: (Online) 1567-1364 - (Print) 1567-1356.
I. Marcelino; R. Laza; P. Domingues; S. Gómez-Meire; F. Fdez-Riverola; A. Pereira (2018) Active and assisted living ecosystem for the elderly. Sensors. Volume 18/4, article ID 1246. ISSN: 1424-8220
F. Fdez-Riverola, guest editor (2018) Special issue: Practical Applications of Computational Biology & Bioinformatics in 2017. Interdisciplinary Sciences: Computational Life Sciences. Volume 10, Issue 1. ISSN: 1913-2751
G. Pérez-Rodríguez; S. Dias; M. Pérez-Pérez; F. Fdez-Riverola; N.F. Azevedo; A. Lourenço (2018) Agent-based model of diffusion of N-acyl homoserine lactones in a multicellular environment of Pseudomonas aeruginosa and Candida albicans. Biofouling. Volume 34/3, pp. 335-345. ISSN: 0892-7014
N. Vázquez; C. P. Vieira; B. S. R. Amorim; A. Torres; H. López-Fernández; F. Fdez-Riverola; J. L. R. Sousa; M. Reboiro-Jato; J. Vieira (2018) Large scale analyses and visualization of adaptive amino acid changes projects. Interdisciplinary Sciences: Computational Life Sciences. Volume 10, pp. 24-32. ISSN: (Online) 1867-1462 - (Print) 1913-2751
A. Ramoa; J. Condeço; M.A. Escoval; J-C. Faber; F. Fdez-Riverola; A. Lourenço (2018) The Evolving Role of Information Systems and Technology in Haemovigilance Notification. Journal of Healthcare Engineering. Vol. 2018: article ID 6183468. ISSN: 2040-2295
O. Graña; H. López-Fernández; F. Fdez-Riverola; D. Pisano; D. Glez-Peña (2018) bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data. Bioinformatics. Volume 34, Issue 8, pp. 1414-1415. ISSN: (Online) 1460-2059 - (Print) 1367-4803
F. Aparicio; M.L. Morales-Botello; M. Rubio; A. Hernando; R. Muñoz; H. López-Fernández; D. Glez-Peña; F. Fdez-Riverola; M. de la Villa; M. Maña; D. Gachet; M. de Buenaga (2018) Perceptions of the use of intelligent information access systems in university level active learning activities among teachers of biomedical subjects. International Journal of Medical Informatics. Volume 112, pp. 21-33. ISSN: 1386-5056
J. Prates; G. Martins; H. López-Fernández; C. Lodeiro; J. L. Capelo; H. M. Santos (2018) Modulating the protein content of complex proteomes using acetonitrile. Talanta. Volume 182, pp. 333-339. ISSN: 0039-9140
J.E. Araújo; H. López-Fernández; P.M. Baltazar; L. Campos-Pinheiro; F. Calais-Da-Silva; M. Carrascal; P. Videira; H.M. Santos; J.L. Capelo-Martínez (2018) Dithiothreitol-based protein equalization technology to unravel biomarkers for bladder cancer. Talanta. Volume 180, pp. 36-46. ISSN: 0039-9140
M. Callón; J. Fdez-Glez; D. Ruano-Ordás; R. Laza; R. Pavón; F. Fdez-Riverola; J.R. Méndez (2018) WARCProcessor: an integrative tool for building and management of web spam corpora. Sensors. Volume 18/1, article ID 16. ISSN: 1424-8220
D. Ruano-Ordas; F. Fdez-Riverola; J.R. Méndez (2018) Using evolutionary computation for discovering spam patterns from e-mail samples. Information Processing & Management. Volume 54/2, pp. 303-317. ISSN: 0306-4573
H. López-Fernández; J.E. Araújo; S. Jorge; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; H.M. Santos; J.L. Capelo-Martínez (2018) S2P: A Software Tool to Quickly Carry Out Reproducible Biomedical Research Projects Involving 2D-Gel and MALDI-TOF MS Protein Data. Computer Methods and Programs in Biomedicine. Volume 155, pp. 1-9. ISSN: 0169-2607
J. Romário de Jesus; H.M. Santos; H. López-Fernández; C. Lodeiro; M.A.Z. Arruda; J.L. Capelo-Martínez (2018) Ultrasonic-Based Membrane Aided Sample Preparation of Urine Proteomes. Talanta. Volume 178, pp. 864-869. ISSN: 0039-9140
D. Ruano-Ordás; F. Fdez-Riverola; J.R. Méndez (2018) Concept drift in e-mail datasets: an empirical study with practical implications. Information Sciences. Volume 428, pp. 120-135. ISSN: 0020-0255

F. Fdez-Riverola; M. Rocha, guest editorial (2017) Selected Extended Papers of the 11th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB). Journal of Integrative Bioinformatics. Volume 14/4. ISSN: 1613-4516
M. Pérez-Pérez; G. Pérez-Rodríguez; F. Fdez-Riverola; A. Lourenço (2017) Collaborative relation annotation and quality analysis in Markyt environment. Database-The Journal of Biological Databases and Curation. Vol. 2017: article ID bax090. ISSN: 1758-0463
C. Hidalgo-Cantabrana; M.A. Moro-García; A. Blanco-Míguez; F. Fdez-Riverola; A. Lourenço; R. Alonso-Arias; B. Sánchez (2017) In silico screening of the human gut metaproteome identifies Th17-promoting peptides encrypted in proteins of commensal bacteria. Frontiers in Microbiology. Vol. 8: article ID 1726. ISSN: 664-302X
M. Krallinger; O. Rabal; A. Lourenço; J. Oyarzabal; A. Valencia (2017) Information Retrieval and Text Mining Technologies for Chemistry. Chemical Reviews. Volume 117 (12), pp. 7673-7761. ISSN: 0009-2665
P. Jorge; M. Pérez-Pérez; G. Pérez-Rodríguez; M.O. Pereira; A. Lourenço (2017) A network perspective on antimicrobial peptide combination therapies: the potential of colistin, polymyxin B and nisin. International Journal of Antimicrobial Agents. Volume 49, Issue 6, pp. 668-676. ISSN: 0924-8579
F. Fdez-Riverola, J.F. De Paz, F.J. Domínguez Mayo, M.P. Rocha, M. Saberi Mohamad, guest editors (2017) Special Issue: Practical Applications of Computational Biology & Bioinformatics. Interdisciplinary Sciences - Computational Life Sciences. Volume 9/1. ISSN: 1913-2751
A. Blanco-Míguez; F. Fdez-Riverola; A. Lourenço; B. Sánchez (2017) P4P: a peptidome-based strain-level genome comparison web tool. Nucleic Acids Research. Volume 45 (Web Server Issue W1), pp. W265-W269. ISSN: 0305-1048
P. Jorge; D. Grzywacz; W. Kamysz; A. Lourenço; M. O. Pereira (2017) Searching for new strategies against biofilm infections: Colistin-AMP combinations against Pseudomonas aeruginosa and Staphylococcus aureus single- and double-species biofilms. PLOS ONE. 12(3): e0174654. ISSN: 1932-6203
M. Pérez-Pérez; P. Jorge; G. Pérez-Rodríguez; M.O. Pereira; A. Lourenço (2017) Quorum sensing inhibition in Pseudomonas aeruginosa biofilms: new insights through network mining. Biofouling. Volume 33, Issue 2, pp. 128-142. ISSN: (Online) 1029-2454 - (Print) 0892-7014
M.E. Rodrigues; S.P. Lopes; C.R. Pereira; N.F. Azevedo; A. Lourenço; M. Henriques; M.O. Pereira (2017) Polymicrobial ventilator-associated pneumonia: fighting in vitro Candida albicans-Pseudomonas aeruginosa biofilms with antifungal-antibacterial combination therapy. PLOS ONE. 12(1): e0170433. ISSN: 1932-6203
J. Azeredo; N. F. Azevedo; R. Briandet; N. Cerca; T. Coenye; A.R. Costa; M. ël Desvaux; G. Di Bonaventura; M. Hébraud; Z. Jaglic; M. Kačániová; S. Knøchel; A. Lourenço; F. Mergulhão; R. L. Meyer; G. Nychas; M. Simões; O. Tresse; C. Sternberg (2016) Critical review on biofilm methods. Critical Reviews in Microbiology. Volume 43, Issue 3, pp. 313-351. ISSN: (Online) 1549-7828 - (Print) 1040-841X
A. Blanco-Míguez; A. Jácome; F. Fdez-Riverola; A. Lourenço; B. Sánchez (2016) MAHMI database: a comprehensive resource for the study of the mechanism of action of the human microbiota. Database-The Journal of Biological Databases and Curation. Vol. 2017: article ID baw157. ISSN: 1758-0463
B. Sánchez; S. Delgado; A. Blanco-Míguez; A. Lourenço; M. Gueimonde; A. Margolles (2016) Probiotics, gut microbiota and their influence on host health and disease. Molecular Nutrition & Food Research. Volume 61, Issue 1: 1600240. ISSN: 1613-4133
M. Rubio-Camarillo; H. López-Fernández; G. Gómez-López; Á. Carro; J.M. Fernández; C. Fustero-Torre; F. Fdez-Riverola; D. Glez-Peña (2017) RUbioSeq+: a multiplatform application that executes parallelized pipelines to analyse next-generation sequencing data. Computer Methods and Programs in Biomedicine. Volume 138, pp. 73-81. ISSN: 0169-2607

A. Blanco-Míguez; J.P. Meier-Kolthoff; A. Gutiérrez-Jácome; M. Göker; F. Fdez-Riverola; B. Sanchez; A. Lourenço (2016) Improving phylogeny reconstruction at the strain level using peptidome datasets. PLoS Computational Biology. Volume 12/12, Article ID e1005271. ISSN: 1553-734X
H. López-Fernández; G. de S. Pessôa; M.A.Z. Arruda; J.L. Capelo-Martínez; F. Fdez-Riverola; D. Glez-Peña; M. Reboiro-Jato (2016) LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data. Journal of Cheminformatics. Volume 8(1), pp. 1-10. ISSN: 1758-2946
M. Rocha; F. Fdez-Riverola (2016) EDITORIAL: Selected Papers from the Annual PACBB Conference 2014: Special Issue. Current Bioinformatics. Volume 11/5, pp. 502-502. ISSN: (Online) 2212-392X - (Print) 1574-8936
M.S. Mohamad; M.P. Rocha; F. Fdez-Riverola; F.J. Domínguez; J.F. De Paz, guest editors (2016) Special Issue: Selected extended papers of the 10th PACBB Conference. Journal of Integrative Bioinformatics. Volume 13/2. ISSN: 1613-4516
H. López-Fernández; M. Reboiro-Jato; J.A. Pérez-Rodríguez; F. Fdez-Riverola; D. Glez-Peña (2016) The Artificial Intelligence Workbench: a retrospective review. Advances in Distributed Computing and Artificial Intelligence Journal. Volume 5/1, pp. 73-85. ISSN: 2255-2863
P. Jorge; M. Pérez-Pérez; G. Pérez Rodríguez; F. Fdez-Riverola; M.O. Pereira; A. Lourenço (2016) Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow. Database-The Journal of Biological Databases and Curation. Vol. 2016: article ID baw143. ISSN: 1758-0463
A. Seara Vieira; L. Borrajo; E.L. Iglesias (2016) Improving the text classification using clustering and a novel HMM to reduce the dimensionality. Computer Methods and Programs in Biomedicine. Volume 136, pp. 119-130. ISSN: 0169-2607
I. Marcelino; R. Laza; A. Pereira (2016) SSN: Senior Social Network for Improving Quality of Life. International Journal of Distributed Sensor Networks. Volume 12(7), Article ID 2150734, 8 pages. ISSN: (Online) 1550-1477 - (Print) 1550-1329
M. Pérez-Pérez; G. Pérez-Rodríguez; O. Rabal; M. Vazquez; J. Oyarzabal; F. Fdez-Riverola; A. Valencia; M. Krallinger; A. Lourenço (2016) The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge. Database-The Journal of Biological Databases and Curation. Vol. 2016: article ID baw120. ISSN: 1758-0463
A. Seara Vieira; E.L. Iglesias; L. Borrajo (2016) An HMM-based Text Classier Less Sensitive to Document Management Problems. Current Bioinformatics. Volume 11/5, pp. 503-514. ISSN: (Online) 2212-392X - (Print) 1574-8936
V. Basto-Fernandes; I. Yevseyeva; J.R. Méndez; J. Zhao; F. Fdez-Riverola; M.T.M. Emmerich (2016) A spam filtering multi-objective optimization study covering parsimony maximization and three-way classification. Applied Soft Computing. Volume 48, pp. 111-123. ISSN: 1568-4946
A. Blanco-Míguez; A. Gutiérrez-Jácome; F. Fdez-Riverola; A. Lourenço; B. Sánchez (2016) A peptidome-based phylogeny pipeline reveals differential peptides at the strain level within Bifidobacterium animalis subsp. lactis. Food Microbiology. Volume 60, pp. 137–141. ISSN: 0740-0020
H. López-Fernández; M. Reboiro-Jato; J.A. Pérez-Rodríguez; F. Fdez-Riverola; D. Glez-Peña (2016) Implementing effective machine learning-based workflows for the analysis of mass spectrometry data. Journal of Integrated OMICS, a methodological journal. Volume 6/1, pp. 1-5.ISSN: 2182-0287
G. Pérez-Rodríguez; M. Pérez-Pérez; F. Fdez-Riverola; A. Lourenço (2016) High performance computing for three-dimensional agent-based molecular models. Journal of Molecular Graphics and Modelling. Volume 68, pp. 68-77. ISSN: 1093-3263
N. Pérez-Díaz; D. Ruano-Ordás; F. Fdez-Riverola; J.R. Méndez (2016) Boosting accuracy of classical machine learning anti-spam classifiers in real scenarios by applying rough set theory. Scientific Programming. Volume 2016, Article ID 5945192, 10 pages. ISSN: 1058-9244
A. Silva; A.M. Sousa; D. Alves; A. Lourenço; M.O. Pereira (2016) Heteroresistance to colistin in Klebsiella pneumoniae is triggered by small colony variants sub-populations within biofilms. Pathogens and Disease. Volume 74, Issue 5. ISSN: 2049-632X
H. López-Fernández (2016) Application of data mining and artificial intelligence techniques to mass spectrometry data for knowledge discovery. Revista Iberoamericana de Inteligencia Artificial. Volume 19(57), pp. 22-25. ISSN: 1988-3064
S. Fontenetea; D. Carvalhoa; A. Lourenço; N. Guimarães; P. Madureira; C. Figueiredo; N.F. Azevedo (2016) FISHji: New ImageJ macros for the quantification of fluorescence in epifluorescence images. Biochemical Engineering Journal. Volume 112, pp. 61–69. ISSN: 1369-703X
G. Pérez-Rodríguez; D. Gameiro; M. Pérez-Pérez; A. Lourenço; N.F. Azevedo (2016) Single Molecule Simulation of Diffusion and Enzyme Kinetics. The Journal of Physical Chemistry B. Volume 120(16), pp. 3809-3820. ISSN: (Online) 1520-5207 - (Print) 1520-6106
A.G. Jácome; F. Fdez-Riverola; A. Lourenço (2016) BIOMedical Search Engine Framework: lightweight and customized implementation of domain-specific biomedical search engines. Computer Methods and Programs in Biomedicine. Volume 131, pp. 63–77. ISSN: 0169-2607
L. Ruiz; C. Hidalgo; A. Blanco-Míguez; A. Lourenço; B. Sánchez; A. Margolles (2016) Tackling probiotic and gut microbiota functionality through proteomics. Journal of Proteomics. Volume 147, pp. 28-39. ISSN: (Online) 1876-7737 - (Print) 1874-3919
A. Blanco-Míguez; A. Gutiérrez-Jácome; M. Pérez-Pérez; G. Pérez-Rodríguez; S. Catalán-García; F. Fdez-Riverola; A. Lourenço; B. Sánchez (2016) From amino acid sequence to bioactivity: The biomedical potential of antitumor peptides. Protein Science. Volume 25/6, pp. 1084–1095.. ISSN: (Online) 1469-896X - (Print) 0961-8368
J.C. Iglesias; F. Fdez-Riverola (2016) Análisis de barreras fundamentales para la adopción de software libre en la sanidad pública: el Servicio Gallego de Salud. Novática. No 235, pp. 68-74. ISSN: 0211-2124
H.J. Gómez-Vallejo; B. Uriel-Latorre; M. Sande-Meijide; B. Villamarín-Bello; R. Pavón; F. Fdez-Riverola; D. Glez-Peña (2016) A case-based reasoning system for aiding detection and classification of nosocomial infections. Decision Support Systems. Volume 84, pp. 104-116. ISSN: 0167-9236
J.E. Araújo; S. Jorge; R. Magriço; T. Costa; A. Ramos; M. Reboiro-Jato; F. Fdez-Riverola; C. Lodeiro; J.L. Capelo; H.M. Santos (2016) Classifying patients in peritoneal dialysis by mass spectrometry-based profiling. Talanta. Volume 152, pp. 364-370. ISSN: 0039-9140
D. Gameiro; M. Pérez-Pérez; G. Pérez-Rodríguez; G. Monteiro; N.F. Azevedo; A. Lourenço (2016) Computational resources and strategies to construct single-molecule metabolic models of microbial cells. Briefings in Bioinformatics. Volume 7/5, pp. 863-876. ISSN: (Online) 1477-4054 - (Print) 1467-5463
G. de S. Pessôa; J.L. Capelo-Martínez; F. Fdez-Riverola; H. López-Fernández; D. Glez-Peña; M. Reboiro-Jato; M.A.Z. Arruda (2016) Laser ablation and inductively coupled plasma mass spectrometry focusing on bioimaging from elemental distribution using MatLab software: a practical guide. Journal of Analytical Atomic Spectrometry. Volume 31, Issue 4, pp. 832-840. ISSN: 0267-9477
J. Fdez-Glez; D. Ruano-Ordás; R. Laza; J.R. Méndez; R. Pavón; F. Fdez-Riverola (2016) WSF2: a novel framework for filtering web spam. Scientific Programming. Volume 2016, Article ID 6091385, 18 pages. ISSN: 1058-9244
R. López-Cortés; J. Formigo; M. Reboiro-Jato; F. Fdez-Riverola; F.J. Blanco; C. Lodeiro; E. Oliveira; J.L. Capelo; H.M. Santos (2016) A methodological approach based on gold-nanoparticles followed by matrix assisted laser desorption ionization time of flight mass spectrometry for the analysis of urine profiling of Knee Osteoarthritis. Talanta. Volume 150, pp. 638-645. ISSN: 0039-9140
D. Ruano-Ordas; J. Fdez-Glez; F. Fdez-Riverola; J.R. Méndez (2016) Using new scheduling heuristics based on resource consumption information for increasing throughput on rule-based spam filtering systems. Software: Practice & Experience. Volume 46/8, pp. 1035–1051. ISSN: 0038-0644
D. Ruano-Ordas; J. Fdez-Glez; F. Fdez-Riverola; V. Basto Fernandes; J.R. Méndez (2016) RuleSIM: A toolkit for simulating rule-based spam filters operation and optimising filtering throughput. Software: Practice & Experience. Volume 46/8, pp. 1091–1108. ISSN: 0038-0644
P. Jorge; M. Pérez-Pérez; G. Pérez Rodríguez; F. Fdez-Riverola; M.O. Pereira; A. Lourenço (2016) Reconstruction of the network of experimentally validated AMP-drug combinations against Pseudomonas aeruginosa infections. Current Bioinformatics. Volume 11/5, pp. 523-530. ISSN: (Online) 2212-392X - (Print) 1574-8936

M. Buenaga; D. Gachet; M. Maña-López; J. Mata-Vázquez; L. Borrajo; E.L. Iglesias (2015) IPHealth: Plataforma inteligente basada en open, linked y big data para la toma de decisiones y aprendizaje en el ámbito de la salud. Procesamiento del Lenguaje Natural. Volume 55, pp. 161-164. ISSN: (Online) 1989-7553 - (Print) 1135-5948
P. Jorge; A. Lourenço; M.O. Pereira (2015) Data quality in biofilm high-throughput routine analysis: intralaboratory protocol adaptation and experiment reproducibility. Journal of AOAC International. Volume 98(6), pp. 1721-1727. ISSN: (Online) 1944-7922 - (Print) 1060-3271
F. Fdez-Riverola; J.F. de Paz; R. Overbeek; M. Rocha, guest editors (2015) Special Issue: Selected extended papers of the 9th PACBB Conference. Journal of Integrative Bioinformatics. Volume 12/4. ISSN: 1613-4516
I. Marcelino; R. Laza; F. Fdez-Riverola; A. Pereira (2015) Removing barriers to promote social computing among senior population. International Journal of Distributed Sensor Networks. Volume 2015, Article ID 820349, 13 pages. ISSN: (Online) 1550-1477 - (Print) 1550-1329
H. López-Fernández; H.M. Santos; J.L. Capelo; F. Fdez-Riverola; D. Glez-Peña; M. Reboiro-Jato (2015) Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery. BMC Bioinformatics. 16:318. ISSN: 1471-2105
A.H. Mohamed Salleh; M. Saberi Mohamad; S. Deris; S. Omatu; F. Fdez-Riverola; J.M. Corchado (2015) Gene knockout identification for metabolite production improvement using a hybrid of genetic ant colony optimization and flux balance analysis. Biotechnology and Bioprocess Engineering. Volume 20/4, pp. 685-693. ISSN: (Online) 1976-3816 - (Print) 1226-8372
S. Gonçalves; D. Carneiro; F. Fdez-Riverola; P. Novais (2015) Análisis del comportamiento en entornos e-Learning. EDMETIC, revista de educación mediática y TIC. Volume 4/2, pp. 137-172. ISSN: 2254-0059
D. Ruano-Ordás; F. Fdez-Riverola; J.R. Méndez (2015) Tendencias actuales en el filtrado de correo spam. Sego-Bit: Revista de la Escuela de Ingeniería Informática de Segovia. Volume 2/1, pp. 39-45. ISSN: 2386-866X
J. E. Araújo; T. Santos; S. Jorge; T. M. Pereira; M. Reboiro-Jato; M. Reyes Pavón; R. Magriço; F. Teixeira-Costa; A. Ramos; H. M. Santos (2015) Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry-based profiling as a step forward in the characterization of peritoneal dialysis effluent. Analytical Methods. Volume 2015, Issue 7, pp. 7467-7473. ISSN: 0003-2654
L. Filipe; F. Fdez-Riverola; N. Costa; A. Pereira (2015) Wireless body area networks for healthcare applications: protocol stack review. International Journal of Distributed Sensor Networks. Volume 2015, Article ID 213705, 23 pages. ISSN: (Online) 1550-1477 - (Print) 1550-1329
J. Fdez-Glez; D. Ruano-Ordás; J.R. Méndez; F. Fdez-Riverola; R. Laza; R. Pavón (2015) A dynamic model for integrating simple web spam classification techniques. Expert Systems With Applications. Volume 42/21, pp. 7969-7978. ISSN: 0957-4174
A. Kolchinsky; A. Lourenço; H.-Y. Wu; L. Li; L.M. Rocha (2015) Extraction of pharmacokinetic evidence of drug-drug interactions from the literature. PLOS ONE. 10/5:e0122199. ISSN: 1932-6203
A.M. Sousa; M.O. Pereira; A. Lourenço (2015) MorphoCol: An ontology-based knowledgebase for the characterisation of clinically significant bacterial colony morphologies. Journal of Biomedical Informatics. Volume 55, pp. 55-63. ISSN: 1532-0464
I. Marcelino; D. Lopes; M. Reis; F. Silva; R. Laza; A. Pereira (2015) Using the eServices Platform for Detecting Behavior Patterns Deviation in the Elderly Assisted Living: A Case Study. BioMed Research International. Volume 2015/Article ID 530828, 10 pages. ISSN: 2314-6133
N. Castelhano Santos; M.O. Pereira; A. Lourenço (2015) Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties. Briefings in Bioinformatics 16(1):169-182. ISSN: (Online) 1477-4054 - (Print) 1467-5463
E. Andrés-León; D. Glez-Peña; G. Gómez-López; D. G. Pisano (2015) miRGate: a curated database of human, mouse and rat miRNA-mRNA targets. Database: The Journal of Biological Databases and Curation. Database 2015, 1-9. ISSN: 1758-0463
G. Pérez-Rodríguez; D. Glez-Peña; N.F. Azevedo; M.O. Pereira; F. Fdez-Riverola; A. Lourenço (2015) Enabling systematic, harmonised and large-scale biofilms data computation: the Biofilms Experiment Workbench. Computer Methods and Programs in Biomedicine. Volume 118/3, pp. 309-321. ISSN: 0169-2607
M. Pérez-Pérez; D. Glez-Peña; F. Fdez-Riverola; A. Lourenço (2015) Marky: A tool supporting annotation consistency in multi-user and iterative document annotation projects. Computer Methods and Programs in Biomedicine. Volume 118/2, pp. 242-251. ISSN: 0169-2607
L. Borrajo; A. Seara Vieira; E.L. Iglesias (2015) TCBR-HMM: An HMM-based text classifier with a CBR system. Applied Soft Computing. Volume 26, pp 463-473. ISSN: 1568-4946
R. Romero; E.L. Iglesias; L. Borrajo (2015) A Linear-RBF Multi-kernel SVM to classify big text corpora. BioMed Research International. Volume 2015/Article ID 878291, 14 pages. ISSN: 2314-6133
G. Pérez-Rodríguez; M. Pérez-Pérez; D. Glez-Peña; F. Fdez-Riverola; N.F. Azevedo; A. Lourenço (2015) Agent-Based Spatiotemporal Simulation of Biomolecular Systems within the Open Source MASON Framework. Biomed Research International. Volume 2015/Article ID 769471, 12 pages. ISSN: 2314-6133
F. Felisberto; R. Laza; F. Fdez-Riverola; A. Pereira (2015) A Distributed Multiagent System Architecture for Body Area Networks Applied to Healthcare Monitoring. Biomed Research International. Volume 2015/Article ID 192454, 17 pages. ISSN: 2314-6133

A.M. Sousa; M.O. Pereira; N.F. Azevedo; A. Lourenço (2014) An harmonised vocabulary for communicating and interchanging Biofilms experimental results. Journal of Integrative Bioinformatics. 11(3):249. ISSN: 1613-4516
A. Lourenço; T. Coenye; D. Goeres; G. Donelli; A. Azevedo; H. Ceri; F. Coelho; H.C. Flemming; T. Juhna; S. Lopes; R. Oliveira; A. Oliver; M. Shirtliff; A.M. Sousa; P. Stoodley; M.O. Pereira; N.F. Azevedo (2014) Minimum information about a biofilm experiment (MIABiE): standards for reporting experiments and data on sessile microbial communities living at interfaces. Pathogens and Disease. 70(3), pp. 250-256. ISSN: 2049-632X
D. Glez-Peña; A. Lourenço; H. López-Fernández; M. Reboiro-Jato; F. Fdez-Riverola (2014) Web scraping technologies in an API world. Briefings in Bioinformatics. Volume 15, Issue 5, pp. 788-797. ISSN: (Online) 1477-4054 - (Print) 1467-5463
N. Costa; P. Domingues; F. Fdez-Riverola; A. Pereira (2014) A mobile virtual butler to bridge the gap between users and ambient assisted living: a smart home case study. Sensors. Volume 14/8, pp. 14302-14329. ISSN: 1424-8220
F. Felisberto; F. Fdez-Riverola; A. Pereira (2014) A Ubiquitous and low-cost solution for movement monitoring and accident detection based on sensor fusion. Sensors. Volume 14/5, pp. 8961-8983. ISSN: 1424-8220
S. Gómez-Meire; C. Campos; E. Falqué; F. Díaz; F. Fdez-Riverola (2014) Assuring the authenticity of northwest Spain white wine varieties using machine learning techniques. Food Research International. Volume 60, pp. 230-240. ISSN: 0963-9969
A.R. Rivas; E.L. Iglesias; L. Borrajo (2014) Study of query expansion techniques and their application in the biomedical information retrieval. The Scientific World Journal. Volume 2014, Article ID 132158. ISSN: (Online) 1537-744X - (Print) 2356-6140
H. López-Fernández; M. Reboiro-Jato; D. Glez-Peña; F. Fdez-Riverola (2014) A comprehensive analysis about the influence of low-level preprocessing techniques on mass spectrometry data for sample classification. International Journal of Data Mining and Bioinformatics. Volume 10/4, pp. 455-473. ISSN: (Online) 1748-5681 - (Print) 1748-5673
C. Fernández-Costa; M. Reboiro-Jato; F. Fdez-Riverola; C. Ruiz-Romero; F.J. Blanco; J.L. Capelo (2014) Sequential Depletion coupled to C18 sequential extraction as a rapid tool for human serum multiple profiling. Talanta. Volume 125, pp. 189-195. ISSN: 0039-9140
M. Reboiro-Jato; J. Arrais; J.L. Oliveira; F. Fdez-Riverola (2014) geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification. BMC Bioinformatics. 15:31. ISSN: 1471-2105
E. Yeguas; M.V. Luzón; R. Pavón; R. Laza; G. Arroyo; F. Díaz (2014) Automatic Parameter Tuning for Evolutionary Algorithms using a Bayesian Case-Based Reasoning System. Applied Soft Computing. Volume 18, pp. 185-195. ISSN: 1568-4946
J.D. Nunes-Miranda; C. Nuñez; H.M. Santos; G. Vale; M. Reboiro-Jato; F. Fdez-Riverola; C. Lodeiro; M. Miró; J.L. Capelo (2014) A mesofluidic platform integrating on-chip probe ultrasonication for multiple sample pretreatment involving denaturation, reduction, and digestion in protein identification assays by mass spectrometry. Analyst. Volume 139/5, pp. 992-995. ISSN: (Online) 1364-5528 - (Print) 0003-2654
M. Reboiro-Jato; F. Díaz; D. Glez-Peña; F. Fdez-Riverola (2014) A novel ensemble of classifiers that use biological relevant gene sets for microarray classification. Applied Soft Computing. Volume 17, pp. 117-126. ISSN: 1568-4946

D. Fuentes; R. Laza; A. Pereira (2013) Intelligent Devices in Rural Wireless Networks. Advances in Distributed Computing and Artificial Intelligence Journal. Volume 2/4, pp. 23-30. ISSN: 2255-2863
C. González; J.C. Burguillo; M. Llamas; R. Laza (2013) Designing Intelligent Tutoring Systems: A Personalization Strategy using Case-Based Reasoning and Multi-Agent Systems. Advances in Distributed Computing and Artificial Intelligence Journal. Volume 2/1, pp. 41-54. ISSN: 2255-2863
E. L. Iglesias; A. Seara Vieira; L. Borrajo (2013) An HMM-based over-sampling technique to improve text classification. Expert Systems With Applications. Volume 40/18, pp. 7184-7192. ISSN: 0957-4174
M. Galesio; H. López-Fdez; M. Reboiro-Jato; S. Gómez-Meire; D. Glez-Peña; F. Fdez-Riverola; C. Lodeiro; M. Diniz; J.L. Capelo (2013) Speeding up the screening of steroids in urine: development of a user-friendly library. Steroids. Volume 78/12-13, pp. 1226-1232. ISSN: 0039-128X
D. Ruano-Ordas; J. Fdez-Glez; F. Fdez-Riverola; J.R. Méndez (2013) Effective scheduling strategies for boosting performance on rule-based spam filtering frameworks. Journal of Systems and Software. Volume 86/12, pp. 3151-3161. ISSN: 0164-1212
J.A. Pérez Rodríguez; F. Fdez-Riverola (2013) Applying Rough Sets for the identification of significant variables in photovoltaic energy production with isolated systems. Jurnal Teknologi. Volume 63/3, pp. 9-16. ISSN: (Online) 2180-3722 - (Print) 0127-9696
J. D. Nunes-Miranda; G. Igrejas; E. Araujo; M. Reboiro-Jato; J.L. Capelo-Martínez (2013) Mass spectrometry-based fingerprinting of proteins & peptides in wine quality control: a critical overview. Critical Reviews in Food Science and Nutrition. Volume 53, pp. 751-759. ISSN: (Online) 1549-7852 - (Print) 1040-8398
A.M. Sousa; J.D. Nunes-Miranda; M. Reboiro-Jato; F. Fdez-Riverola; A. Lourenço; M.O. Pereira; J.L. Capelo (2013) A new approach to bacterial colony morphotyping by matrix-assisted laser desorption ionization time of flight-based mass spectrometry. Talanta. Volume 116/15, pp. 100-107. ISSN: 0039-9140
C.H. Fajardo; S. Gómez-Meire; J.F. Gálvez; F. Fdez-Riverola (2013) A hybrid artificial intelligence model for river flow forecasting. Applied Soft Computing. Volume 13/8, pp. 3449-3458. ISSN: 1568-4946
R.J. Carreira; J.D Nunes-Miranda; A. Gonçalves; G. Igrejas; P. Poeta; S. Gómez-Meire; M. Reboiro-Jato; F. Fdez-Riverola; C. Lodeiro; J.L. Capelo-Martínez (2013) Enzymatic protein digests do not assist in E. coli discrimination at the strain level using mass spectrometry. Journal of Integrated OMICS, a methodological journal. Volume 3/1, pp. 44-50. ISSN: 2182-0287
A.R. Araújo; M. Reis; H. Rocha; B. Aguiar; R. Morales-Hojas; S. Macedo-Ribeiro; N.A. Fonseca; D. Reboiro-Jato; M. Reboiro-Jato; F. Fdez-Riverola; C.P. Vieira; J. Vieira (2013) The Drosophila melanogaster methuselah gene: a novel gene with ancient functions. PLOS ONE. 8/5:e63747. ISSN: 1932-6203
B. Aguiar; J. Vieira; A.E. Cunha; N.A. Fonseca; D. Reboiro-Jato; M. Reboiro-Jato; F. Fdez-Riverola; O. Raspé; C.P. Vieira (2013) Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S-pollen genes support the 'non-self recognition by multiple factors' model. Journal of Experimental Botany. Volume 64/8, pp. 2423-2434. ISSN: (Online) 1460-2431 - (Print) 0022-0957
H. López-Fernández; D. Glez-Peña; M. Reboiro-Jato; F. Aparicio; D. Gachet; M. Buenaga; F. Fdez-Riverola (2013) BioAnnote: A software platform for annotating biomedical documents with application in medical learning environments. Computer Methods and Programs in Biomedicine. 111/1, pp. 139-147. ISSN: 0169-2607
D. Ruano-Ordas; N. Pérez-Díaz; F. Fdez-Riverola; J.R. Méndez (2013) Wirebrush4SPAM: a novel framework for improving efficiency on spam filtering services. Software: Practice & Experience. Volume 43/11, pp. 1299-1318. ISSN: 0038-0644
M. Reboiro-Jato; R. Laza; H. López-Fernández; D. Glez-Peña; F. Díaz; F. Fdez-Riverola (2013) genEnsemble: a new model for the combination of classifiers and integration of biological knowledge applied to genomic data. Expert Systems With Applications. Volume 40/1, pp. 52-63. ISSN: 0957-4174
I. Yevseyeva; V. Basto Fernandes; D. Ruano-Ordás; J.R. Méndez (2013) Optimising anti-spam filters with evolutionary algorithms. Expert Systems With Applications. Volume 40(10), pp. 4010-4021
V. Basto Fernandes; I. Yevseyeva; J.R. Méndez (2013) Optimization of Anti-Spam Systems with Multiobjective Evolutionary Algorithms. Information Resources Management Journal. Volume 26(1), pp. 54-67

L. Hirschman; G.A.P.C. Burns; M. Krallinger; C.N. Arighi; K. Bretonnel Cohen; A. Valencia; C. H. Wu; A. Chatr-aryamontri; K. G. Dowell; E. Huala; A. Lourenço; R.S. Nash; A-L. Veuthey; T.C. Wiegers; A.G. Winter (2012) Text mining for the biocuration workflow. Database 2012. ISSN: 1758-0463
A. Lourenço; M. Conover; A. Wong; A. Nematzadeh; F. Pan; H. Shatkay; L. Mateus Rocha (2012) Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature. BMC Bioinformatics 13: 180. ISSN: 1471-2105
A. Ramoa; S. Maia; A. Lourenço (2012) A Rational Framework for Production Decision Making in Blood Establishments. J. Integrative Bioinformatics 9(3):204. ISSN: 1613-4516
A.M. Sousa; A. Ferreira; N.F. Azevedo; M.O. Pereira; A. Lourenço (2012) Computational approaches to standard-compliant biofilm data for reliable analysis and integration. J. Integrative Bioinformatics 9(3). ISSN: 1613-4516
A; Kolchinsky; A. Lourenço; L- Li; L. Mateus Rocha (2012) Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions. CoRR abs/1210.0734
M. Rodrigues; S. Gonçalves; F. Fdez-Riverola; P. Novais (2012) E-learning platforms and e-learning students: building the bridge to success. Advances in Distributed Computing and Artificial Intelligence Journal. Volume 1/2, pp. 21-34. ISSN: 2255-2863
M. Reboiro-Jato; D. Glez-Peña; F. Díaz; F. Fdez-Riverola (2012) A novel ensemble approach for multicategory classification of DNA microarray data using biological relevant gene sets. International Journal of Data Mining and Bioinformatics. Volume 6/6, pp. 602-616. ISSN: (Online) 1748-5681 - (Print) 1748-5673
D. Reboiro-Jato; M. Reboiro-Jato; F. Fdez-Riverola; C.P. Vieira; N.A. Fonseca; J. Vieira (2012) ADOPS - Automatic detection of positively selected sites. Journal of Integrative Bioinformatics. 9/3:200. ISSN: 1613-4516
F. Felisberto; N. Costa; F. Fdez-Riverola; A. Pereira (2012) Unobstructive Body Area Networks (BAN) for Efficient Movement Monitoring. Sensors. Volume 12/9, pp. 12473-12488. ISSN: 1424-8220
R. López-Cortés; E. Oliveira; C. Núñez; C. Lodeiro; M. Páez de la Cadena; F. Fdez-Riverola; H. López-Fernández; M. Reboiro-Jato; D. Glez-Peña; J.L. Capelo; H.M. Santos (2012) Fast human serum profiling through chemical depletion coupled to gold-nanoparticle-assisted protein separation. Talanta. Volume 100, pp. 239-245. ISSN: 0039-9140
D. Calvo-Dmgz; J.F. Gálvez; D. Glez-Peña; S. Gómez-Meire; F. Fdez-Riverola (2012) Using variable precision rough set for selection and classification of biological knowledge integrated in DNA gene expression. Journal of Integrative Bioinformatics. 9/3:199. ISSN: 1613-4516
J.R. Méndez; M. Reboiro-Jato; F. Díaz; E. Díaz; F. Fdez-Riverola (2012) Grindstone4Spam: an optimization toolkit for boosting e-mail classification. Journal of Systems and Software. Volume 85/12, pp. 2909-2920. ISSN: 0164-1212
N. Pérez-Díaz; D. Ruano-Ordás; J.R. Méndez; J.F. Gálvez; F. Fdez-Riverola (2012) Rough Sets for spam filtering: selecting appropriate decision rules for boundary e-mail classification. Applied Soft Computing. Volume 12/11, pp. 3671-3682. ISSN: 1568-4946
F. Fdez-Riverola; D. Glez-Peña; H. López-Fernández; M. Reboiro-Jato; J.R. Méndez (2012) A Java application framework for scientific software development. Software: Practice & Experience. Volume 42/8, pp. 1015-1036. ISSN: 0038-0644
E. Doménech; G. Gómez; D. Glez-peña; M. López; B. Herreros; J. Menezes; N. Gómez-lozano; Á. Carro; O. Graña; D. Pisano; O. Domínguez; J.A. García Marco; M.A. Piris; M. Sánchez Beato (2012) New mutations in chronic lymphocytic leukemia identified by target enrichment and deep sequencing. PLOS ONE. Volume 7/6:e38158. ISSN: 1932-6203
N. Pérez-Díaz; D. Ruano-Ordas; F. Fdez-Riverola; J.R. Méndez (2012) SDAI: an integral evaluation methodology for content-based spam filtering models. Expert Systems With Applications. Volume 39/16, pp. 12487-12500. ISSN: 0957-4174
J. Bajo; M.L. Borrajo; J.F. de Paz; J.M. Corchado; M.A. Pellicer (2012) A multi-agent system for web-based risk management in small and medium business. Expert Systems With Applications. Volume 39/8, pp. 6921-6931. ISSN: 0957-4174
R. Romero; E.L. Iglesias; M.L. Borrajo (2012) Applying balancing techniques to classify biomedical documents: an empirical study. International Journal of Artificial Intelligence. 8(S12). ISSN 0974-0635
J.D. Nunes-Miranda; H.M. Santos; M. Reboiro-Jato; F. Fdez-Riverola; G. Igrejas; C. Lodeiro; J.L. Capelo (2012) Direct matrix assisted laser desorption ionization mass spectrometry-based analysis of wine as a powerful tool for classification purposes. Talanta. Volume 91, pp. 72-76. ISSN: 0039-9140

G. Vale; H.M. Santos; R.J. Carreira; L. Fonseca; M. Miró; V. Cerdà; M. Reboiro-Jato; J.L. Capelo (2011) An assessment of the ultrasonic probe-based enhancement of protein cleavage with immobilized trypsin. Proteomics. Volume 21/4, pp. 277-296. Print ISSN: 0129-0657. Online ISSN: 1793-6462
M.L. Borrajo; B. Baruque; E. Corchado; J. Bajo; J.M. Corchado (2011) Hybrid neural intelligent system to predict business failure in small-to-medium-size enterprises. International Journal of Neural Systems. Volume 11/19, pp. 3866-3876. ISSN: 1615-9861
M.L. Borrajo; R. Romero; E.L. Iglesias; C.M. Redondo Marey (2011) Improving imbalanced scientific text classification using sampling strategies and dictionaries. Journal of Integrative Bioinformatics. 8/3:176. ISSN: 1613-4516
H. López-Fernández; M. Reboiro-Jato; D. Glez-Peña; J.R. Méndez-Reboredo; H.M. Santos; R.J. Carreira; J.L. Capelo; F. Fdez-Riverola (2011) Rapid development of proteomic applications with the AIBench framework. Journal of Integrative Bioinformatics. 8/3:171. ISSN: 1613-4516
R. Laza; R. Pavón; M. Reboiro-Jato; F. Fdez-Riverola (2011) Evaluating the effect of unbalanced data in biomedical document classification. Journal of Integrative Bioinformatics. 8/3:177. ISSN: 1613-4516
M. Reboiro-Jato; J. Glez-Dopazo; D. Glez; R. Laza; J.F. Gálvez; R. Pavón; D. Glez-Peña; F. Fdez-Riverola (2011) Using Inductive Learning to Assess Compound Feed Production in Cooperative Poultry Farms. Expert Systems With Applications. Volume 38/11, pp. 14169-14177. ISSN: 0957-4174
M. Reboiro-Jato; D. Glez-Peña; F. Fdez-Riverola; F. Díaz (2011) A simulated annealing-based algorithm for iterative class discovery using fuzzy logic for informative gene selection. Journal of Integrated OMICS, a methodological journal. Volume 1/1, pp. 66-77. ISSN: 2182-0287
D. Glez-Peña; G. Gómez-López; M. Reboiro-Jato; F. Fdez-Riverola; D.G. Pisano (2011) PileLine: a toolbox to handle genome position information in next-generation sequencing studies. BMC Bioinformatics. 12:31. ISSN: 1471-2105
H. López-Fernández; D. Glez-Peña; M. Reboiro-Jato; G. Gómez-López; D.G. Pisano; F. Fdez-Riverola (2011) PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies. Nucleic Acids Research. Volume 39 (suppl 2), pp. W562-W566. ISSN: 0305-1048

D. Glez-Peña; M. Reboiro-Jato; R. Domínguez; G. Gómez-López; D.G. Pisano; F. Fdez-Riverola (2010) PathJam: a new service for integrating biological pathway information. Journal of Integrative Bioinformatics. Volume 7/1:147. ISSN: 1613-4516
R. Pavón; F. Díaz; R. Laza; M.V. Luzón (2010) Experimental evaluation of an automatic parameter setting system. Expert Systems with Applications. Volume 37/7, pp. 5224-5238. ISSN: 0957-4174
H.M. Santos; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; M.S. Diniz; C. Lodeiro; J.L. Capelo (2010) A novel 18-O inverse labeling-based workflow for accurate bottom-up mass spectrometry quantification of proteins separated by gel electrophoresis. Electrophoresis. Volume 31, pp. 3407-3419. ISSN: 0173-0835
H.M. Santos; M. Reboiro-Jato; D. Glez-Peña; M.S. Diniz; F. Fdez-Riverola; R. Carvalho; C. Lodeiro; J.L. Capelo (2010) Decision peptide-driven: a free software tool for accurate protein quantification using gel electrophoresis and matrix assisted laser desorption ionization time of flight mass spectrometry. Talanta. Volume 82/4, pp. 1412-1420. ISSN: 0039-9140
R.J. Carreira; C. Lodeiro; M. Reboiro-Jato; D. Glez-Peña; F. Fdez-Riverola; J.L. Capelo (2010) Indirect Ultrasonication for Protein Quantification and Peptide Mass Mapping through Mass Spectrometry-Based Techniques. Talanta. Volume 82/2, pp. 587-593. ISSN: 0039-9140
S. Gómez-Meire; M. Reboiro-Jato; C.H. Fajardo; D. Olivieri (2010) A Robust Algorithm for Forming Note Complexes. Revista Iberoamericana de Inteligencia Artificial. Volume 47, pp. 27-37. ISSN: 1137-3601
D. Glez-Peña (2010) Model for explicit biological knowledge integration in DNA microarray gene expression classification. Revista Iberoamericana de Inteligencia Artificial 14(45), pp. 1-4. ISSN: 1137-3601
R. Pavón (2010) Redes bayesianas para el ajuste de parámetros de algoritmos genéticos usados en problemas de satisfacción de restricciones geométricas. Revista Iberoamericana de Inteligencia Artificial 14(45), pp. 5-8. ISSN: 1137-3601
D. Glez-Peña; D. Gómez-Blanco; M. Reboiro-Jato; F. Fdez-Riverola; D. Posada (2010) ALTER: program-oriented format conversion of DNA and protein alignments. Nucleic Acids Research. 38(Web Server issue):W14-W18. ISSN: 0305-1048
M.L. Borrajo; J.M. Corchado; E.S. Corchado; M.A. Pellicer; J. Bajo (2010) Multi-agent neural business control system.Information Sciences. Volume 180, pp. 911-927. ISSN: 911-927
D. Glez-Peña; M. Reboiro-Jato; P. Maia; F. Díaz; F. Fdez-Riverola (2010) AIBench: a rapid application development framework for translational research in biomedicine. Computer Methods and Programs in Biomedicine 98(2010), pp. 191-203. ISSN: 0169-2607
A. Lourenço; R.C. Carreira; D. Glez-Peña; J.R. Méndez; S.A. Carneiro; L.M. Rocha; F. Díaz; E.C. Ferreira; I.P. Rocha; F. Fdez-Riverola; M. Rocha (2010) BioDR: semantic indexing networks for biomedical document retrieval. Expert Systems With Applications. Volume 37/4, pp. 3444-3453. ISSN:0957-4174

E. Corchado; M.A. Pellicer; M.L. Borrajo (2009) A maximum likelihood Hebbian learning-based method to an agent-based architecture. International Journal of Computer Mathematics. Volume 86/10-11, pp. 1760-1768. ISSN: 1029-0265
J.R. Méndez; D. Glez-Peña; F. Fdez-Riverola; F. Díaz; J.M. Corchado (2009) Managing Irrelevant Knowledge in CBR Models for Unsolicited E-mail Classification. Expert Systems With Applications. Volume 36/2, pp. 1601-1614. ISSN: 0957-4174
D. Glez-Peña; F. Díaz; J.M. Hernández; J.M. Corchado; F. Fdez-Riverola (2009) geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research. BMC Bioinformatics. 10:187. ISSN: 1471-2105
D. Glez-Peña; R. Álvarez; F. Díaz; F. Fdez-Riverola (2009) DFP: A Bioconductor package for fuzzy profile identification and gene reduction of microarray data. BMC Bioinformatics. 10:37. ISSN: 1471-2105
A. Lourenço; R.C. Carreira; S.A. Carneiro; P.J. Maia; D. Glez-Peña; F. Fdez-Riverola; E.C. Ferreira; I.P. Rocha; M. Rocha (2009) @Note: A Workbench for Biomedical Text Mining. Journal of Biomedical Informatics. Volume 42/4, pp. 710-720. ISSN: 1532-0464
D. Glez-Peña; G. Gómez-López; D.G. Pisano; F. Fdez-Riverola (2009) WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis. Nucleic Acids Research. 37(Web Server issue):W329-W334. ISSN: 0305-1048
R. Pavón; F. Díaz; R. Laza; M.V. Luzón (2009). Automatic parameter tuning with a bayesian case-based reasoning system. A case of study. Expert Systems With Applications. Volume 36/2, pp. 3407-3420. ISSN: 0957-4174

C.H. Fajardo; D. Glez-Peña; B. Soto; F. Fdez-Riverola (2008) Water Flows Modelling and Forecasting Using a RBF Neural Network. S&T: Sistemas & Telemática. Volume 6/12, pp. 13-31. ISSN: 1692-5238
R. Pavón; F. Díaz; M.V. Luzón (2008). A model for parameter setting based on bayesian networks. Engineering Applications of Artificial Intelligence. Volume 21/1, pp.14-25. ISSN: 0952-1976
L. Borrajo; R. Laza; J. M. Corchado (2008). A complex case-based advisor. Applied Artificial Intelligence (AAI). Volume 22/5, pp. 377-406. ISSN: 0883-9514

F. Fdez-Riverola; F. Díaz; J.M. Corchado (2007) Reducing the Memory Size of a Fuzzy Case-Based Reasoning System Applying Rough Set Techniques. IEEE Transactions on Systems, Man and Cybernetics, Part C: Applications and Reviews. Volume 37/1, pp. 138-146. ISSN: 1094-6977
J.R. Méndez; E. Estévez; F. Fdez-Riverola; D. Glez-Peña (2007) Software libre en la enseñanza: primeras jornadas organizadas por OuSLi en el ámbito de la educación. Novática. No 190, pp. 61-63. ISSN: 0211-2124
F. Fdez-Riverola; E.L. Iglesias; F. Díaz; J.R. Méndez; J.M. Corchado (2007) SpamHunting: An Instance-Based Reasoning System for Spam Labelling and Filtering. Decision Support Systems. Volume 43/3, pp. 722-736. ISSN: 0167-9236
F. Fdez-Riverola; E.L. Iglesias; F. Díaz; J.R. Méndez; J.M. Corchado (2007) Applying Lazy Learning Algorithms to Tackle Concept Drift in Spam Filtering. Expert Systems With Applications. Volume 33/1, pp. 36-48. ISSN: 0957-4174
J.R. Méndez; F. Fdez-Riverola; F. Díaz; J.M. Corchado (2007) Sistemas inteligentes para la detección y filtrado de correo spam: una revisión. Revista Iberoamericana de Inteligencia Artificial. No 34, Vol 11, pp. 63-81. ISSN: 1137-3601

F. Díaz; F. Fdez-Riverola; J.M. Corchado (2006) GENE-CBR: a Case-Based Reasoning Tool for Cancer Diagnosis using Microarray Datasets. Computational Intelligence. Volume/Issue 22/3-4, pp. 254-268. ISSN: 0824-7935

J.M. Corchado; J. Aiken; E.S. Corchado; F. Fdez-Riverola (2005) Evaluating the air-sea interactions and fluxes using an instance-based reasoning system. Ai Communications. Volume/Issue 18/4, pp. 247-256. ISSN: 0921-7126
J.R. Méndez; E.L. Iglesias; F. Fdez-Riverola; F. Díaz; J.M. Corchado (2005) Analyzing the Impact of Corpus Preprocessing on Anti-Spam Filtering Software. Research on Computing Science. Volume 17, pp. 129-138. ISSN: 1665-9899

F. Fdez-Riverola; J.M. Corchado (2004) FSfRT: Forecasting System for Red Tides. Applied Intelligence. Special Issue on Soft Computing in Case-Based Reasoning. Volume/Issue 21/3, pp. 251-264. ISSN: 0924-669X
R. Laza; R. Pavón; J. M. Corchado (2004). A Reasoning Model For Cbr-bdi Agents Using An Adaptable Fuzzy Inference en LNAI Current topics in artificial intelligence. Volume 3040, pp. 96-106. ISSN: 0302-9743
J. M. Corchado; R. Laza; L. F. Castillo (2004). Arquitectura basada en agentes para desarrollar aplicciones de internet. Novática. Volume 170, pp. 30-34. ISSN: 0211-2124
J. M. Corchado; R. Laza; L. F. Castillo (2004). An Agent-based architecture for developing internet-based aplications. Upgrade. Volume V, pp. 51-55. ISSN: 1684-5285

F. Fdez-Riverola (2003) Modelo neuro-simbólico para la predicción no supervisada de entornos cambiantes. Revista Iberoamericana de Inteligencia Artificial. No 18, Vol. II, pp. 85-88. ISSN: 1137-3601
F. Fdez-Riverola; J.M. Corchado (2003) Forecasting Red Tides Using an Hybrid Neuro-Symbolic System. AI Communications: Special Issue BESAI-02 workshop. Volume/Issue 16/4, pp. 221-233. ISSN: 0921-7126
F. Fdez-Riverola; J.M. Corchado (2003) FSfRT: Forecasting System for Red Tides. An Hybrid Autonomous AI Model. Applied Artificial Intelligence. Volume/Issue 17/10, pp. 955-982. ISSN: 0883-9514 (Paper) 1087-6545 (Online)
F. Fdez-Riverola; J.M. Corchado (2003) CBR based System for Forecasting Red Tides. Special Issue of the International Journal of Knowledge-Based Systems. Volume/Issue 16/5-6, pp. 321-328. ISSN: 0950-7051
N.R. Brisaboa; E.L. Iglesias; G. Navarro; J.R. Paramá (2003) An Efficient Compression Code for Text Databases. Advances in Information Retrieval. 25th European Conference on IR Research ECIR 2003. pp. 468-481. ISSN: 0302-9743
J. M. Corchado; R. Laza; L. Borrajo, J.C. Yañez; M. Valiño (2003). Increasing the autonomy of deliberative agents with a case-based reasoning system. Interational Journal of Computational Intelligence and Applications. Volume 3, pp. 101-118. ISSN: 1469-0268
J. M. Corchado; R. Laza (2003). Constructing deliberative agents with case-based reasoning technology. Interational Journal of Intelligent Systems. Volume 18, pp. 1227-1241. ISSN: 0884-8173

S. López Poza; N.R. Brisaboa; M.R. Penabad; E.L. Iglesias; J.R. Paramá (2002) Acceso a una base de datos de literatura emblemática a través de Internet. Comunicación y Pedagogía (C&P). Volume 181, pp. 63-68. ISSN: 1136-7733

R. Pavón; R. Laza; A. Gómez; J.M. Corchado (2001). Improving The Revision Stage Of A Cbr System With Belief Revision Techniques. Computing and Information Systems Journal. Volume 8, pp. 40-45. ISSN 1352-9404
R. Laza; J.M. Corchado (2001). Creation of Deliberative Agents using a CBR Model. Computing and Information Systems Journal. Volume 8, pp. 33-39. ISSN 1352-9404
J.M. Corchado; R. Laza; L. Borrajo; M. Valiño (2001). An Autonomous Agent-based engineering sales support system. Computing and Information Systems Journal. Volume 8, pp. 138-147. ISSN 1352-9404

F. Fdez-Riverola; J.M. Corchado (2000) Sistemas híbridos Neuro-Simbólicos: Una revisión. Revista Iberoamericana de Inteligencia Artificial. No 11, Vol I, pp. 12-26. ISSN: 1137-3601

Indexing

Publications

Top 10 recent publications