BDBM BLAST DataBase Manager

What is BDBM?

BDBM (BLAST DataBase Manager) provides a graphical user interface that allows you to create high quality sequence datasets using the tools included. Using these tools you can perform several common tasks such as doing BLAST alignments, getting the open reading frames of the sequences in a Fasta file or changing the format of a Fasta file. All these task make use of several known tools such as EMBOSS, bedtools, and NCBI's BLAST, Splign & Compart, and ProSplign & ProCompart. In addition, BDBM helps you keep your sequence files ordered in a file repository.

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Cite Us:

N. Vázquez; H. López-Fernández; C.P. Vieira; F. Fdez-Riverola; J. Vieira; M. Reboiro-Jato (2019) BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High Quality Sequence Data and Application to the Identification of the Putative Coffea S-locus. Interdisciplinary Sciences: Computational Life Sciences. Volume 11(1), pp. 57-67. ISSN: 1913-2751